PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32594.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LBD
Protein Properties Length: 231aa    MW: 25704.5 Da    PI: 6.6385
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32594.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.37.1e-4051051100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasn+ kll++lp ++r++a+++l yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk
  Dca32594.1   5 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNIAKLLSQLPVDDRSEAATTLSYEAQARVHDPIYGCVSHIFALQQQVVSLQAQLATLK 103
                 7*************************89*********************************************************************99 PP

      DUF260  99 ee 100
                 ++
  Dca32594.1 104 QQ 105
                 97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.644106IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-385103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSGSPCGACK FLRRKCVRGC VFAPYFCHEQ GATHFAAIHK VFGASNIAKL LSQLPVDDRS  60
EAATTLSYEA QARVHDPIYG CVSHIFALQQ QVVSLQAQLA TLKQQTTNNM INVNYSTLNP  120
NAPSSSNYPQ DVQSWLQSQH PHMVLPPLDP NLDRTSKSSV IYGDHRYNQN NNSTTMMVQN  180
NDQDVSLASF DEGSSSHHSI ASTEFEFKSK WPFDEDSNDL HSMAFGYTQH S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679217.11e-105PREDICTED: LOB domain-containing protein 29
SwissprotQ9SLB63e-64LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A0J8F3K91e-105A0A0J8F3K9_BETVU; Uncharacterized protein
STRINGVIT_07s0005g03020.t012e-80(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.15e-52LBD family protein